Guys, all is well!
I just wasn't heating the plastic enough. So, after I spent the afternoon, wiping out, and cleaning my molds, I gave it another shot. This time, I heated plastic up 'without' color first. Just right out of the bottle, to see the transition it makes from milky to clear. I did 3 minutes for 8 ounces on high.
Then I added my color (black in this case), have it another minute in the m-wave, stirred a lot, and poued. My baits turned out perfect.
I just poured some 2 tone baits. 9" sluggos with pearl oon the bottom and black on top, and they look fine.
Thanks for your help guys. You saved the day.